Can't we do something that if it doesn't see the world.ini it generates a default one + Nether/end world?
EDIT:
I now vote for the first suggestion xoft gave, because I thought that each MCServer would have an Nether/End without you being able to change it.
EDIT:
I now vote for the first suggestion xoft gave, because I thought that each MCServer would have an Nether/End without you being able to change it.