Unable to load all files on server start

[bluejellybean]

Actually I think it's MSVC's fault here.

MSVC stores the debugging settings in a per-user file that is not saved into Git. One of those settings is "working folder", which is the folder that MCServer assumes is its home folder, where it looks for all the ini files, world folders, plugin an player folders etc. You need to set that folder to "..\MCServer":

I'm a tad lost on where exactly to change that. I've tried a few different places and all that happens is I get a world with ocean.