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i broke about 100 long grass but none of them dropped seeds.
when you use bonemeal none of the bonemeal will be used (you start with 64 bonemeal you end with 64 bonemeal)
mountain deserts still have grass.
crops drop just one seed.
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i first had r575 and then i updated it to r580 and now it uses much more of my CPU.
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I know this might sound like a chore, but would you mind testing each revision until you hit the CPU usage increase?
My guess would be r578, but I'd like confirmation on that.
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I'm not getting any CPU usage increase at all. The current dev version (based on Rev 580) runs with basically no CPU usage at all, even with a client connected.
Are you sure the server isn't doing something else in the background - generating new terrain or saving chunks or something like that?